Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103480834C2H2-type domain-containing protein. (698 aa)    
Predicted Functional Partners:
rbbp4
Retinoblastoma binding protein 4.
    
 0.685
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
 0.685
brca1
Uncharacterized protein.
    
  0.637
dclre1b
DNA cross-link repair 1B.
    
 
 0.590
srbd1
S1 RNA binding domain 1.
    
 
 0.580
LOC103472130
Human immunodeficiency virus type I enhancer binding protein 3a.
  
   
 0.555
rnf166
Ring finger protein 166.
   
 0.531
ENSPREP00000011081
Nuclear apoptosis inducing factor 1.
      
 0.521
znf276
Zinc finger protein 276.
      
 0.503
LOC103479352
Uncharacterized protein.
  
 
  0.465
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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