STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prpf38aPre-mRNA processing factor 38A. (324 aa)    
Predicted Functional Partners:
mfap1
Microfibril associated protein 1.
   
 0.996
TCERG1
Transcription elongation regulator 1.
   
 0.978
rnps1
RNA binding protein S1, serine-rich domain.
   
 
 0.929
zmat2
Zinc finger, matrin-type 2.
   
 0.910
prpf38b
Uncharacterized protein.
   
 
  0.903
plrg1
Pleiotropic regulator 1.
 
 
 
 0.898
ik
IK cytokine.
   
 
 0.854
UBL5
Ubiquitin like 5.
    
 0.837
LOC103461139
RNA binding motif protein 39b.
    
 0.824
rbm39
Uncharacterized protein.
    
 0.824
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.