STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cabcoco1Uncharacterized protein. (218 aa)    
Predicted Functional Partners:
cplx4
Complexin 4a.
      
 0.727
SBSPON
Somatomedin B and thrombospondin type 1 domain containing.
    
 0.702
tcte1
T-complex-associated-testis-expressed 1.
    
 0.674
phf13
PHD finger protein 13.
    
 0.661
sdr39u1
Short chain dehydrogenase/reductase family 39U, member 1.
      
 0.627
terb1
Telomere repeat binding bouquet formation protein 1.
      
 0.598
znf367
Zinc finger protein 367.
    
 0.590
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.510
fancm
Uncharacterized protein.
    
 0.510
YTHDC2
YTH domain containing 2.
    
 
 0.508
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.