STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103477735Zona pellucida glycoprotein 3d tandem duplicate 2. (436 aa)    
Predicted Functional Partners:
efcab2
EF-hand calcium binding domain 2.
      
 0.751
morn3
MORN repeat containing 3.
      
 0.692
spata18
Spermatogenesis associated 18.
      
 0.603
LOC103470385
Cilia and flagella associated protein 52.
      
 0.578
LOC103464137
Protocadherin 18a.
      
 0.548
LOC103479596
Zona pellucida glycoprotein 2, like 2.
      
 0.548
LOC103461813
Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.
      
 0.548
marchf11
Membrane-associated ring finger (C3HC4) 11.
      
 0.548
ropn1l
Rhophilin associated tail protein 1-like.
      
 0.545
zar1
Zygote arrest 1.
   
  
 0.525
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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