STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103471015Cyclic nucleotide-binding domain-containing protein. (663 aa)    
Predicted Functional Partners:
LOC103482329
Cyclic nucleotide gated channel beta 3, tandem duplicate 1.
  
0.846
LOC103482304
Cyclic nucleotide gated channel beta 3, tandem duplicate 2.
  
0.845
ENSPREP00000001490
Si:dkey-44k1.5.
  
0.841
cngb1
Cyclic nucleotide gated channel beta 1a.
  
0.840
cnga4
Cyclic nucleotide gated channel subunit alpha 4.
  
  
 
0.558
cnga3
Cyclic nucleotide gated channel subunit alpha 3a.
  
  
 
0.553
LOC103467465
Cyclic nucleotide gated channel subunit alpha 1a.
  
  
 
0.552
ENSPREP00000026286
Cyclic nucleotide-binding domain-containing protein.
  
  
 
0.551
LOC103460308
Cyclic nucleotide gated channel subunit alpha 1b.
  
  
 
0.550
ENSPREP00000031276
Cyclic nucleotide gated channel alpha 2b.
  
  
 
0.548
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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