STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
otop2Otopetrin 2. (598 aa)    
Predicted Functional Partners:
LOC103468834
Usher syndrome 1Ga (autosomal recessive).
      
 0.696
tmem128
Transmembrane protein 107.
      
 0.601
HID1
HID1 domain containing.
      
 0.581
hid1
HID1 domain containing b.
      
 0.581
ush1g
Usher syndrome 1Gb (autosomal recessive).
      
 0.577
LOC103475431
Uncharacterized protein.
   
  
 0.497
anks4b
Ankyrin repeat and sterile alpha motif domain containing 4B.
      
 0.488
LOC103464762
Uncharacterized protein.
      
 0.408
hvcn1
Hydrogen voltage-gated channel 1.
      
 0.407
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.