STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdfy3WD repeat and FYVE domain containing 3. (3545 aa)    
Predicted Functional Partners:
sqstm1
Sequestosome 1.
   
 
 0.792
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 
 0.670
map1lc3c
Microtubule-associated protein 1 light chain 3 gamma.
    
 
 0.611
gabarapl2
GABA(A) receptor-associated protein like 2.
   
 
 0.595
GABARAPL2
GABA type A receptor associated protein like 2.
   
 
 0.595
gabarap
GABA(A) receptor-associated protein b.
   
 
 0.595
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 
 0.578
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 
 0.567
rack1
Receptor for activated C kinase 1.
    
 0.565
smpd2
Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase).
     
 0.564
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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