STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wdfy3WD repeat and FYVE domain containing 3. (3545 aa)    
Predicted Functional Partners:
sqstm1
Sequestosome 1.
   
 0.995
nbr1
NBR1 autophagy cargo receptor a.
   
 0.956
Calcoco2
SKICH domain-containing protein.
     
 0.925
optn
Optineurin.
     
 0.923
tax1bp1
Tax1 (human T-cell leukemia virus type I) binding protein 1b.
     
 0.911
LOC103472185
Tax1 (human T-cell leukemia virus type I) binding protein 1a.
     
 0.907
rps27a
Ribosomal protein S27a.
    
  0.904
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
     
  0.900
Map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
    
 0.873
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
    
 0.873
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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