STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znf536Zinc finger protein 536. (1454 aa)    
Predicted Functional Partners:
zbtb2
Zinc finger and BTB domain containing 2b.
    
   0.661
LOC103473609
POU domain protein.
    
  0.609
sergef
Secretion regulating guanine nucleotide exchange factor.
    
 0.599
ush1c
Usher syndrome 1C.
    
 
 0.596
ENSPREP00000006071
Fin bud initiation factor b.
      
 0.592
ENSPREP00000011352
Uncharacterized protein.
     
 0.590
LOC103474391
LisH domain-containing protein.
    
  0.573
rbbp4
Retinoblastoma binding protein 4.
    
  0.552
RBBP7
RB binding protein 7, chromatin remodeling factor.
    
  0.552
ZFC3H1
Zinc finger C3H1-type containing.
      
 0.539
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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