STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znf536Zinc finger protein 536. (1454 aa)    
Predicted Functional Partners:
tshz3
Teashirt zinc finger homeobox 3b.
     
 0.551
LOC103478616
Stathmin 2a.
    
 0.511
sergef
Secretion regulating guanine nucleotide exchange factor.
    
 0.488
LOC103462261
Plakophilin 3b.
    
 
 0.487
cd81
Tetraspanin.
      
 0.475
ENSPREP00000021150
Fin bud initiation factor a.
      
 0.475
ENSPREP00000011352
Uncharacterized protein.
     
 0.474
ush1c
Usher syndrome 1C.
    
 
 0.474
LOC103465759
AMP deaminase; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family.
      
 0.473
tbc1d15
TBC1 domain family, member 15.
      
 0.473
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.