STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vps50VPS50 EARP/GARPII complex subunit. (992 aa)    
Predicted Functional Partners:
vps51
VPS51 subunit of GARP complex.
    
 0.994
vps54
VPS54 subunit of GARP complex.
    
 
 0.988
vps53
VPS53 subunit of GARP complex.
   
 
 0.988
vps52
VPS52 subunit of GARP complex.
   
 
 0.988
eipr1
EARP complex and GARP complex interacting protein 1.
    
 
 0.986
snap29
Synaptosome associated protein 29.
    
   0.889
hepacam2
HEPACAM family member 2.
 
    
 0.770
ccdc186
Si:ch211-225b10.4.
      
 0.670
dym
Dymeclin.
      
 0.593
rev1
REV1 DNA directed polymerase.
      
 0.570
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.