LOC103472579 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103472579

STE20-like kinase b. (1004 aa)

Predicted Functional Partners:

PLK1

0.903

slk

0.901

LOC103474790

0.900

cdk1

0.900

RPL37A

0.653

exoc4

0.482

ENSPREP00000004746

0.478

c1qbp

0.466

rock2

0.439

rock1

0.439

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000004746	LOC103472579	ENSPREP00000004746	ENSPREP00000004056	V-SNARE coiled-coil homology domain-containing protein.	STE20-like kinase b.	0.478
ENSPREP00000004746	c1qbp	ENSPREP00000004746	ENSPREP00000012108	V-SNARE coiled-coil homology domain-containing protein.	Complement component 1, q subcomponent binding protein.	0.594
ENSPREP00000004746	exoc4	ENSPREP00000004746	ENSPREP00000005337	V-SNARE coiled-coil homology domain-containing protein.	Exocyst complex component 4.	0.577
ENSPREP00000004746	rock1	ENSPREP00000004746	ENSPREP00000009624	V-SNARE coiled-coil homology domain-containing protein.	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.562
ENSPREP00000004746	rock2	ENSPREP00000004746	ENSPREP00000007499	V-SNARE coiled-coil homology domain-containing protein.	Rho-associated protein kinase; Protein kinase which is a key regulator of actin cytoskeleton and cell polarity.	0.562
ENSPREP00000004746	slk	ENSPREP00000004746	ENSPREP00000019464	V-SNARE coiled-coil homology domain-containing protein.	STE20-like kinase a.	0.478
LOC103472579	ENSPREP00000004746	ENSPREP00000004056	ENSPREP00000004746	STE20-like kinase b.	V-SNARE coiled-coil homology domain-containing protein.	0.478
LOC103472579	LOC103474790	ENSPREP00000004056	ENSPREP00000008318	STE20-like kinase b.	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	0.900
LOC103472579	PLK1	ENSPREP00000004056	ENSPREP00000000056	STE20-like kinase b.	Serine/threonine-protein kinase PLK.	0.903
LOC103472579	RPL37A	ENSPREP00000004056	ENSPREP00000031565	STE20-like kinase b.	Ribosomal protein L37a.	0.653
LOC103472579	c1qbp	ENSPREP00000004056	ENSPREP00000012108	STE20-like kinase b.	Complement component 1, q subcomponent binding protein.	0.466
LOC103472579	cdk1	ENSPREP00000004056	ENSPREP00000010273	STE20-like kinase b.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.900
LOC103472579	exoc4	ENSPREP00000004056	ENSPREP00000005337	STE20-like kinase b.	Exocyst complex component 4.	0.482
LOC103472579	rock1	ENSPREP00000004056	ENSPREP00000009624	STE20-like kinase b.	Rho-associated, coiled-coil containing protein kinase 1; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family.	0.439
LOC103472579	rock2	ENSPREP00000004056	ENSPREP00000007499	STE20-like kinase b.	Rho-associated protein kinase; Protein kinase which is a key regulator of actin cytoskeleton and cell polarity.	0.439
LOC103472579	slk	ENSPREP00000004056	ENSPREP00000019464	STE20-like kinase b.	STE20-like kinase a.	0.901
LOC103474790	LOC103472579	ENSPREP00000008318	ENSPREP00000004056	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	STE20-like kinase b.	0.900
LOC103474790	PLK1	ENSPREP00000008318	ENSPREP00000000056	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	Serine/threonine-protein kinase PLK.	0.988
LOC103474790	cdk1	ENSPREP00000008318	ENSPREP00000010273	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.991
LOC103474790	slk	ENSPREP00000008318	ENSPREP00000019464	Cyclin N-terminal domain containing 2; Belongs to the cyclin family.	STE20-like kinase a.	0.900