STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103476427Synaptopodin 2-like a. (1102 aa)    
Predicted Functional Partners:
LOC103463852
OCIA domain containing 2.
      
 0.630
LOC103466651
Synemin, intermediate filament protein; Belongs to the intermediate filament family.
  
 
 0.627
lias
Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
   
  
 0.597
LOC103470120
SET and MYND domain containing 1b.
   
  
 0.570
wdtc1
WD and tetratricopeptide repeats 1.
    
 
 0.567
MYOZ1
Myozenin 1.
 
 
  
 0.533
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
      
 0.480
arfip1
ADP-ribosylation factor interacting protein 1 (arfaptin 1).
    
 
 0.465
LOC103475545
ADP-ribosylation factor interacting protein 2b.
    
 
 0.465
LOC103474983
ADP-ribosylation factor interacting protein 2a.
    
 
 0.465
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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