STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx28DEAD (Asp-Glu-Ala-Asp) box polypeptide 28. (569 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.978
LOC103482313
Neuroguidin, EIF4E binding protein.
   
 0.967
mrm3
SpoU_sub_bind domain-containing protein.
  
 
 0.941
esf1
ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae).
   
 
 0.934
mrpl4
Mitochondrial ribosomal protein L4.
   
 0.906
wdr46
WD repeat domain 46.
   
 0.900
krr1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.898
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
  
0.880
ftsj3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 0.878
pdcd11
Programmed cell death 11.
   
 0.877
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.