Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478535Paraoxonase 1. (355 aa)    
Predicted Functional Partners:
LOC103478537
Uncharacterized protein.
   
  0.966
nfyc
Nuclear transcription factor Y, gamma.
    
   0.897
srrd
SRR1 domain containing.
      
 0.528
ENSPREP00000028539
GRAM domain-containing protein.
      
 0.525
apof
Apolipoprotein F.
      
 0.461
dhx40
DEAH (Asp-Glu-Ala-His) box polypeptide 40.
      
 0.452
chrac1
Chromatin accessibility complex subunit 1.
    
   0.430
ENSPREP00000003193
PWWP domain-containing protein.
      
 0.429
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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