STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103467702Testis specific protein Y-linked; Belongs to the nucleosome assembly protein (NAP) family. (568 aa)    
Predicted Functional Partners:
wdr13
WD repeat domain 13.
    
 
 0.751
smim20
Small integral membrane protein 20.
      
 0.671
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
 
 0.661
LOC103470692
Histone H2A; Belongs to the histone H2A family.
   
 
 0.661
nup214
Nup214_FG domain-containing protein.
     
 0.625
LOC103466967
Fork-head domain-containing protein.
      
 0.621
asf1b
Anti-silencing function 1Ba histone chaperone.
   
 
 0.613
LOC103468786
Anti-silencing function 1Ba histone chaperone.
   
 
 0.613
mcph1
Microcephalin 1.
     
 0.609
suv39h1
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
   
 
 0.607
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.