STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103467702Testis specific protein Y-linked; Belongs to the nucleosome assembly protein (NAP) family. (568 aa)    
Predicted Functional Partners:
zmynd8
Protein kinase C binding protein 1, like.
   
 
 0.899
LOC103465581
Zinc finger, MYND-type containing 8.
   
 
 0.899
wdr13
WD repeat domain 13.
    
 
 0.887
LOC103466967
Fork-head domain-containing protein.
      
 0.886
rho
Rhodopsin; Photoreceptor required for image-forming vision at low light intensity. While most salt water fish species use retinal as chromophore, most freshwater fish use 3-dehydroretinal, or a mixture of retinal and 3-dehydroretinal (By similarity). Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change that activates signaling via G-proteins. Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by arrestin and terminates signaling (By similarity).
      
 0.841
RHO
Extra-ocular rhodopsin.
      
 0.745
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
 
 0.737
LOC103470692
Histone H2A; Belongs to the histone H2A family.
   
 
 0.737
LOC103464571
Rhodopsin.
      
 0.701
LOC103478145
Zinc finger protein 687a.
    
 
 0.689
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.