LOC103465623 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC103465623

Si:dkey-106n21.1. (602 aa)

Predicted Functional Partners:

slc23a1

0.903

LOC103481193

0.902

gart

0.725

umps

0.657

LOC103465806

0.616

GOLT1B

0.616

dpyd

0.545

dhodh

0.545

ftsj3

0.503

gpr143

0.479

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GOLT1B	LOC103465623	ENSPREP00000019170	ENSPREP00000004145	Golgi transport 1B.	Si:dkey-106n21.1.	0.616
GOLT1B	LOC103481193	ENSPREP00000019170	ENSPREP00000031076	Golgi transport 1B.	Zgc:110789.	0.616
GOLT1B	dhodh	ENSPREP00000019170	ENSPREP00000033422	Golgi transport 1B.	Dihydroorotate dehydrogenase.	0.890
GOLT1B	dpyd	ENSPREP00000019170	ENSPREP00000021733	Golgi transport 1B.	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	0.890
GOLT1B	gart	ENSPREP00000019170	ENSPREP00000009460	Golgi transport 1B.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.730
GOLT1B	gpr143	ENSPREP00000019170	ENSPREP00000001977	Golgi transport 1B.	G protein-coupled receptor 143.	0.657
GOLT1B	slc23a1	ENSPREP00000019170	ENSPREP00000006020	Golgi transport 1B.	Solute carrier family 23 member 1.	0.616
GOLT1B	umps	ENSPREP00000019170	ENSPREP00000023343	Golgi transport 1B.	Uridine monophosphate synthetase.	0.948
LOC103465623	GOLT1B	ENSPREP00000004145	ENSPREP00000019170	Si:dkey-106n21.1.	Golgi transport 1B.	0.616
LOC103465623	LOC103465806	ENSPREP00000004145	ENSPREP00000011765	Si:dkey-106n21.1.	Golgi transport 1Bb.	0.616
LOC103465623	LOC103481193	ENSPREP00000004145	ENSPREP00000031076	Si:dkey-106n21.1.	Zgc:110789.	0.902
LOC103465623	dhodh	ENSPREP00000004145	ENSPREP00000033422	Si:dkey-106n21.1.	Dihydroorotate dehydrogenase.	0.545
LOC103465623	dpyd	ENSPREP00000004145	ENSPREP00000021733	Si:dkey-106n21.1.	Dihydropyrimidine dehydrogenase [NADP(+)]; Involved in pyrimidine base degradation. Catalyzes the reduction of uracil and thymine; Belongs to the dihydropyrimidine dehydrogenase family.	0.545
LOC103465623	ftsj3	ENSPREP00000004145	ENSPREP00000022015	Si:dkey-106n21.1.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.503
LOC103465623	gart	ENSPREP00000004145	ENSPREP00000009460	Si:dkey-106n21.1.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.725
LOC103465623	gpr143	ENSPREP00000004145	ENSPREP00000001977	Si:dkey-106n21.1.	G protein-coupled receptor 143.	0.479
LOC103465623	slc23a1	ENSPREP00000004145	ENSPREP00000006020	Si:dkey-106n21.1.	Solute carrier family 23 member 1.	0.903
LOC103465623	umps	ENSPREP00000004145	ENSPREP00000023343	Si:dkey-106n21.1.	Uridine monophosphate synthetase.	0.657
LOC103465806	LOC103465623	ENSPREP00000011765	ENSPREP00000004145	Golgi transport 1Bb.	Si:dkey-106n21.1.	0.616
LOC103465806	LOC103481193	ENSPREP00000011765	ENSPREP00000031076	Golgi transport 1Bb.	Zgc:110789.	0.616