LOC103478532 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103478532

Zgc:86598; Belongs to the protein kinase superfamily. (392 aa)

Predicted Functional Partners:

LOC103472902

0.984

LOC103478541

0.984

FUNDC1

0.945

fundc1

0.945

ENSPREP00000001242

0.943

dvl2

0.943

ENSPREP00000020826

0.943

ctnnb1

0.911

LOC103472282

0.905

LOC103465502

0.900

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000001242	ENSPREP00000020826	ENSPREP00000001242	ENSPREP00000020826	DIX domain-containing protein.	DIX domain-containing protein.	0.901
ENSPREP00000001242	LOC103465502	ENSPREP00000001242	ENSPREP00000031042	DIX domain-containing protein.	Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.	0.943
ENSPREP00000001242	LOC103472282	ENSPREP00000001242	ENSPREP00000005903	DIX domain-containing protein.	Uncharacterized protein.	0.559
ENSPREP00000001242	LOC103472902	ENSPREP00000001242	ENSPREP00000002889	DIX domain-containing protein.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.939
ENSPREP00000001242	LOC103478532	ENSPREP00000001242	ENSPREP00000004150	DIX domain-containing protein.	Zgc:86598; Belongs to the protein kinase superfamily.	0.943
ENSPREP00000001242	LOC103478541	ENSPREP00000001242	ENSPREP00000003798	DIX domain-containing protein.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.939
ENSPREP00000001242	ctnnb1	ENSPREP00000001242	ENSPREP00000019419	DIX domain-containing protein.	Catenin (cadherin-associated protein), beta 1.	0.591
ENSPREP00000001242	dvl2	ENSPREP00000001242	ENSPREP00000018043	DIX domain-containing protein.	Dishevelled segment polarity protein 2.	0.910
ENSPREP00000020826	ENSPREP00000001242	ENSPREP00000020826	ENSPREP00000001242	DIX domain-containing protein.	DIX domain-containing protein.	0.901
ENSPREP00000020826	LOC103465502	ENSPREP00000020826	ENSPREP00000031042	DIX domain-containing protein.	Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.	0.943
ENSPREP00000020826	LOC103472282	ENSPREP00000020826	ENSPREP00000005903	DIX domain-containing protein.	Uncharacterized protein.	0.559
ENSPREP00000020826	LOC103472902	ENSPREP00000020826	ENSPREP00000002889	DIX domain-containing protein.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.939
ENSPREP00000020826	LOC103478532	ENSPREP00000020826	ENSPREP00000004150	DIX domain-containing protein.	Zgc:86598; Belongs to the protein kinase superfamily.	0.943
ENSPREP00000020826	LOC103478541	ENSPREP00000020826	ENSPREP00000003798	DIX domain-containing protein.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.939
ENSPREP00000020826	ctnnb1	ENSPREP00000020826	ENSPREP00000019419	DIX domain-containing protein.	Catenin (cadherin-associated protein), beta 1.	0.591
ENSPREP00000020826	dvl2	ENSPREP00000020826	ENSPREP00000018043	DIX domain-containing protein.	Dishevelled segment polarity protein 2.	0.910
FUNDC1	LOC103465502	ENSPREP00000014071	ENSPREP00000031042	FUN14 domain containing 1.	Casein kinase 2, alpha 4 polypeptide; Belongs to the protein kinase superfamily.	0.945
FUNDC1	LOC103472902	ENSPREP00000014071	ENSPREP00000002889	FUN14 domain containing 1.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.956
FUNDC1	LOC103478532	ENSPREP00000014071	ENSPREP00000004150	FUN14 domain containing 1.	Zgc:86598; Belongs to the protein kinase superfamily.	0.945
FUNDC1	LOC103478541	ENSPREP00000014071	ENSPREP00000003798	FUN14 domain containing 1.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.956