STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103470404Cardiomyopathy associated 5. (1606 aa)    
Predicted Functional Partners:
nrap
Nebulin-related anchoring protein.
   
 
 0.913
pask
PAS domain containing serine/threonine kinase.
    
 0.732
ACSF3
Acyl-CoA synthetase family member 3.
      
 0.691
LOC103470120
SET and MYND domain containing 1b.
   
 0.652
MYOZ1
Myozenin 1.
   
 
 0.641
myot
Myotilin.
   
 
 0.601
trmt112
tRNA methyltransferase subunit 11-2.
    
 
 0.598
smyd4
SET and MYND domain containing 4.
   
 0.597
dnajc12
DnaJ (Hsp40) homolog, subfamily C, member 12.
      
 0.592
LOC103456857
FAST kinase domains 3.
      
 0.591
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.