STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sptssaSerine palmitoyltransferase, small subunit A. (68 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
    
 0.998
sptlc3
Serine palmitoyltransferase, long chain base subunit 3.
    
 0.959
ormdl1
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 
 0.924
LOC103460525
Serine palmitoyltransferase, long chain base subunit 2a.
    
 0.907
LOC103457821
Serine palmitoyltransferase, long chain base subunit 2b.
    
 0.907
sptssb
Serine palmitoyltransferase, small subunit B.
  
  
0.875
ism1
Isthmin 1.
    
 0.807
LOC103467776
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 
 0.783
LOC103481706
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 
 0.783
LOC103460663
AMOP domain-containing protein.
    
 0.668
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.