STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sptssaSerine palmitoyltransferase, small subunit A. (68 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
    
 0.954
ormdl1
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 
 0.784
LOC103460525
Serine palmitoyltransferase, long chain base subunit 2a.
    
 0.733
ism1
Isthmin 1.
    
 0.733
sptlc3
Serine palmitoyltransferase, long chain base subunit 3.
    
 0.733
LOC103457821
Serine palmitoyltransferase, long chain base subunit 2b.
    
 0.733
sptssb
Serine palmitoyltransferase, small subunit B.
  
  
0.684
LOC103467776
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 
 0.667
LOC103481706
ORM1-like protein; Negative regulator of sphingolipid synthesis.
    
 
 0.667
LOC103460663
AMOP domain-containing protein.
    
 0.655
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.