STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
snx25Sorting nexin 25. (978 aa)    
Predicted Functional Partners:
LOC103471023
RAB33A, member RAS oncogene family.
      
 0.625
ENSPREP00000005436
Uncharacterized protein.
     
 0.603
Ccdc177
Uncharacterized protein.
     
 0.603
Mrs2
Magnesium transporter.
      
 0.603
mcu
Mitochondrial calcium uniporter.
      
 0.603
rapgef2
Rap guanine nucleotide exchange factor (GEF) 2.
      
 0.597
LOC103457708
Notochord granular surface; Belongs to the intermediate filament family.
      
 0.580
rnmt
mRNA cap guanine-N7 methyltransferase.
      
 0.575
snapc3
Small nuclear RNA activating complex, polypeptide 3.
      
 0.557
Macrod2
Uncharacterized protein.
      
 0.556
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.