STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam133bFamily with sequence similarity 133 member B. (265 aa)    
Predicted Functional Partners:
LOC103466238
Uncharacterized protein.
      
 0.614
lg2h3orf70
Zgc:162707.
      
 0.614
thoc7
THO complex 7.
      
 0.595
thoc3
THO complex 3.
      
 0.591
knop1
Lysine-rich nucleolar protein 1.
      
 0.587
ENSPREP00000003551
Caspase recruitment domain family, member 14.
      
 0.578
rnf151
Ring finger protein 151.
    
   0.577
dedd2
Death effector domain-containing 1.
      
 0.576
nkapd1
Zgc:162339.
    
   0.541
Rrp15
Ribosomal RNA processing 15 homolog.
    
   0.533
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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