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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prrx1Paired related homeobox 1a. (245 aa)    
Predicted Functional Partners:
znf366
Zinc finger protein 366.
   
 
 0.564
hhex
Homeobox domain-containing protein.
      
0.549
ENSPREP00000013515
SEP domain-containing protein.
      
 0.525
rtf2
Replication termination factor 2.
      
 0.468
tbx15
T-box transcription factor 15.
   
 
 0.466
ENSPREP00000019590
Uncharacterized protein.
   
 
 0.452
POMC
Proopiomelanocortin.
   
  
 0.450
LOC103481412
Vitamin K epoxide reductase complex, subunit 1.
      
 0.431
sgcd
Sarcoglycan, delta (dystrophin-associated glycoprotein).
   
  
 0.427
sox9
HMG box domain-containing protein.
    
 
 0.425
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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