STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prrx1Paired related homeobox 1a. (245 aa)    
Predicted Functional Partners:
col6a1
Collagen, type VI, alpha 1.
   
 
 0.775
TIMP3
TIMP metallopeptidase inhibitor 3.
   
  
 0.728
ENSPREP00000013515
SEP domain-containing protein.
      
 0.678
LOC103481412
Vitamin K epoxide reductase complex, subunit 1.
      
 0.648
rtf2
Replication termination factor 2.
      
 0.623
postn
Periostin, osteoblast specific factor a.
   
  
 0.614
LOC103474978
Periostin, osteoblast specific factor b.
   
  
 0.614
LOC103468846
TIMP metallopeptidase inhibitor 2b.
   
  
 0.606
LOC103481516
TIMP metallopeptidase inhibitor 2a.
   
  
 0.606
gpsm1
G protein signaling modulator 1b.
    
 
 0.606
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.