STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem175Transmembrane protein 175. (521 aa)    
Predicted Functional Partners:
lamp1
Lysosomal associated membrane protein 1a.
    
 
 0.846
LOC103467077
Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.
      
 0.758
DGKQ
Diacylglycerol kinase.
      
 0.724
LOC103480138
Lysosomal associated membrane protein 1.
    
 
 0.674
LOC103479588
Transmembrane protein 275.
      
 0.598
PCGF3
Polycomb group ring finger 3.
      
 0.588
SAMD5
Sterile alpha motif domain containing 5.
      
 0.531
ddrgk1
Uncharacterized protein.
      
 0.500
zswim7
Zinc finger, SWIM-type containing 7.
      
 0.498
LOC103470567
Transmembrane protein 230b.
      
 0.492
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.