STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
syf2SYF2 pre-mRNA-splicing factor. (238 aa)    
Predicted Functional Partners:
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.998
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.998
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
 0.998
ccdc12
Coiled-coil domain containing 12.
    
  0.998
xab2
XPA binding protein 2.
    
 0.997
dhx38
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
    
 0.997
slu7
SLU7 homolog, splicing factor.
   
 0.996
yju2
YJU2 splicing factor homolog.
    
 0.996
fam32a
Family with sequence similarity 32 member A.
   
 0.992
cwf19l2
CWF19 like cell cycle control factor 2.
    
 0.992
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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