STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103478965WW domain-containing protein. (511 aa)    
Predicted Functional Partners:
LOC103457395
RNA binding motif protein 25b.
   
 0.873
LOC103458235
RNA binding motif protein 25a.
   
 0.873
LOC103471296
E3 ubiquitin protein ligase.
   
 0.871
rnf40
E3 ubiquitin protein ligase.
   
 0.871
snrnp70
Small nuclear ribonucleoprotein 70 (U1).
   
 
 0.832
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.793
sf3b3
Splicing factor 3b, subunit 3.
    
 
 0.777
sf3b2
Splicing factor 3b, subunit 2.
   
 
 0.770
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
   0.736
htatsf1
HIV-1 Tat specific factor 1.
   
 
 0.731
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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