Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ubxn7UBX domain protein 7. (564 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 0.999
eloc
Elongin C paralog a; Belongs to the SKP1 family.
   
 0.997
cul2
Cullin 2; Belongs to the cullin family.
   
 0.994
rps27a
Ribosomal protein S27a.
    
 0.991
psmb2
Proteasome subunit beta.
    
 0.989
nploc4
NPL4 homolog, ubiquitin recognition factor.
   
 0.988
FAAP100
FA core complex associated protein 100.
   
 0.988
ubxn1
UBX domain protein 1.
   
 
 0.987
faf1
Fas (TNFRSF6) associated factor 1.
   
 
 0.984
aspscr1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 
 0.983
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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