STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nptx1Uncharacterized protein. (422 aa)    
Predicted Functional Partners:
rnf2
Ring finger protein 2.
    
 0.693
RING1
Ring finger protein 1.
    
 0.693
ppp1r14c
Protein phosphatase 1, regulatory (inhibitor) subunit 14C.
   
    0.588
eed
Embryonic ectoderm development.
    
 0.551
nsmaf
Neutral sphingomyelinase (N-SMase) activation associated factor.
      
 0.529
LOC103476992
Glutathione S-transferase.
      
 0.525
psmc1
Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.
      
 0.522
pcgf5
Polycomb group ring finger 5a.
    
 0.489
PCGF2
Polycomb group ring finger 2.
    
 0.489
PCGF3
Polycomb group ring finger 3.
    
 0.489
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.