STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
iqsec3IQ motif and Sec7 domain 3a. (1254 aa)    
Predicted Functional Partners:
insyn1
Inhibitory synaptic factor 1.
      
 0.758
rbm43
RRM domain-containing protein.
      
 0.724
ENSPREP00000016383
ADP-ribosylation factor 6b.
   
 
 0.656
ENSPREP00000022524
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
   
 
 0.656
LOC103469051
RNA binding protein fox-1 homolog 3; RNA-binding protein that regulates alternative splicing events.
   
 
 0.640
TMEM236
Transmembrane protein 236.
      
 0.598
LOC103479818
Transmembrane protein 236.
      
 0.598
ppm1e
Protein phosphatase, Mg2+/Mn2+ dependent, 1E.
      
 0.586
supt5h
Transcription elongation factor SPT5.
      
 0.584
znf143
Zinc finger protein 143b.
      
 0.529
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.