STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rbmx2Uncharacterized protein. (221 aa)    
Predicted Functional Partners:
ENSPREP00000025430
BUD13 homolog.
   
 0.986
snip1
Smad nuclear interacting protein.
   
 0.962
sf3b4
Splicing factor 3b, subunit 4.
    
 0.923
sf3b1
Splicing factor 3b, subunit 1.
    
 0.906
phf5a
PHD finger protein 5A.
    
 
 0.858
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.856
LOC103460347
ISY1 splicing factor homolog.
   
 
 0.855
sf3b2
Splicing factor 3b, subunit 2.
    
 
 0.851
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.842
sf3a2
Splicing factor 3a, subunit 2.
    
 0.841
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.