STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrp2Low density lipoprotein receptor-related protein 2a. (4564 aa)    
Predicted Functional Partners:
ptch2
Patched 2.
    
 0.908
ptch1
Patched 1.
    
 0.908
cdon
Cell adhesion associated, oncogene regulated.
     
 0.907
boc
BOC cell adhesion associated, oncogene regulated.
     
 0.907
Gas1
Growth arrest-specific 1a.
     
 0.905
ENSPREP00000030267
Growth arrest-specific 1b.
     
 0.902
LOC103462620
Uncharacterized protein.
     
 0.901
ENSPREP00000033800
Uncharacterized protein.
     
 
0.900
ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
    
 0.853
musk
Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
   
 0.786
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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