STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
maco1Macoilin 1b. (680 aa)    
Predicted Functional Partners:
tmem50a
Transmembrane protein 50A.
 
    
 0.662
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
      
 0.647
syf2
SYF2 pre-mRNA-splicing factor.
   
  
 0.644
rsrp1
Arginine/serine-rich protein 1.
      
 0.598
LOC103458645
Rh blood group, D antigen.
      
 0.598
c2cd2l
C2cd2 like.
      
 0.595
dedd2
Death effector domain-containing 1.
      
 0.534
ilkap
Integrin-linked kinase-associated serine/threonine phosphatase.
      
 0.529
srprb
SRP receptor subunit beta.
      
 0.503
lcmt1
Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family.
      
 0.503
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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