STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mtrexMtr4 exosome RNA helicase. (1053 aa)    
Predicted Functional Partners:
LOC103461154
RNA binding motif protein 7.
    
 0.999
zcchc8
Zinc finger, CCHC domain containing 8.
    
 0.998
exosc10
Exosome component 10.
   
 0.997
ZFC3H1
Zinc finger C3H1-type containing.
    
 0.997
exosc4
Exosome component 4.
   
 0.995
exosc3
Exosome component 3.
   
 0.995
exosc2
Exosome component 2.
   
 0.995
ENSPREP00000026599
Exosome component 7.
   
 0.995
exosc5
Exosome component 5.
   
 0.993
c1d
C1D nuclear receptor corepressor.
   
 0.992
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.