STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103460560C2H2-type domain-containing protein. (402 aa)    
Predicted Functional Partners:
ENSPREP00000008570
ERH mRNA splicing and mitosis factor.
    
 
 0.656
erh
Enhancer of rudimentary homolog; May have a role in the cell cycle.
    
 
 0.656
cfap20
Cilia and flagella associated protein 20.
    
 
 0.469
Cebpd
CCAAT/enhancer-binding protein.
   
 0.439
ENSPREP00000014094
NDK domain-containing protein.
   
 0.422
ENSPREP00000034105
Proline-rich transmembrane protein 2.
    
 0.419
hspb1
Heat shock protein, alpha-crystallin-related, 1; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.418
LOC103473747
Heat shock protein, alpha-crystallin-related, b15; Belongs to the small heat shock protein (HSP20) family.
    
 
 0.418
chtop
Chromatin target of PRMT1a.
    
 
 0.412
ENSPREP00000023746
Kinesin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.409
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.