STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
snapc2Uncharacterized protein. (456 aa)    
Predicted Functional Partners:
LOC103458088
Small nuclear RNA activating complex, polypeptide 1b.
    
 0.999
snapc4
Uncharacterized protein.
    
 0.999
snapc3
Small nuclear RNA activating complex, polypeptide 3.
    
 0.997
snapc5
Small nuclear RNA activating complex, polypeptide 5.
    
 0.993
LOC103472961
POU domain protein.
    
  0.675
pou2f1
POU domain protein.
    
  0.675
pou2f2
POU domain protein.
    
  0.675
pou2f3
POU domain protein.
    
  0.675
tbpl2
Uncharacterized protein.
    
 0.659
tbp
TATA box binding protein.
    
 0.659
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.