STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prdm8PR domain containing 8b. (569 aa)    
Predicted Functional Partners:
bhlhe22
Basic helix-loop-helix family, member e22.
   
 
 0.654
LOC103460048
Uncharacterized protein.
    
 0.615
PRDM6
PR/SET domain 6.
      
 0.570
ENSPREP00000004409
Uncharacterized protein.
      
 0.565
LOC103458615
NK2 homeobox 2a.
      
 0.486
PRDM15
PR/SET domain 15.
    
 0.464
hmgcll1
3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.
      
 0.460
LOC103472032
Hippocalcin like 4.
      
 0.459
ENSPREP00000015231
Shroom family member 4.
      
 0.451
prdm5
Zinc finger protein.
    
 0.441
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.