LOC103466888 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC103466888

Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (172 aa)

Predicted Functional Partners:

LOC103466188

0.640

iqca1

0.625

LOC103472976

0.624

flot1

0.619

LOC103482185

0.553

xpo1

0.550

LOC103469402

0.537

LOC103462133

0.501

LOC103479882

0.501

LOC103465968

0.501

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103462133	LOC103466888	ENSPREP00000009559	ENSPREP00000004507	Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.501
LOC103465968	LOC103466888	ENSPREP00000019934	ENSPREP00000004507	Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.501
LOC103466188	LOC103466888	ENSPREP00000030693	ENSPREP00000004507	Uncharacterized protein.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.640
LOC103466188	iqca1	ENSPREP00000030693	ENSPREP00000023574	Uncharacterized protein.	IQ motif containing with AAA domain 1.	0.536
LOC103466188	xpo1	ENSPREP00000030693	ENSPREP00000030733	Uncharacterized protein.	Exportin 1 (CRM1 homolog, yeast) a.	0.527
LOC103466888	LOC103462133	ENSPREP00000004507	ENSPREP00000009559	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.501
LOC103466888	LOC103465968	ENSPREP00000004507	ENSPREP00000019934	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.501
LOC103466888	LOC103466188	ENSPREP00000004507	ENSPREP00000030693	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Uncharacterized protein.	0.640
LOC103466888	LOC103469402	ENSPREP00000004507	ENSPREP00000014515	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Caveolae associated protein 1a.	0.537
LOC103466888	LOC103472976	ENSPREP00000004507	ENSPREP00000011522	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.624
LOC103466888	LOC103479882	ENSPREP00000004507	ENSPREP00000019878	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Myosin IXb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.501
LOC103466888	LOC103482185	ENSPREP00000004507	ENSPREP00000005200	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Caveolae associated protein 1b.	0.553
LOC103466888	flot1	ENSPREP00000004507	ENSPREP00000019284	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.619
LOC103466888	iqca1	ENSPREP00000004507	ENSPREP00000023574	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	IQ motif containing with AAA domain 1.	0.625
LOC103466888	xpo1	ENSPREP00000004507	ENSPREP00000030733	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	Exportin 1 (CRM1 homolog, yeast) a.	0.550
LOC103469402	LOC103466888	ENSPREP00000014515	ENSPREP00000004507	Caveolae associated protein 1a.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.537
LOC103469402	LOC103472976	ENSPREP00000014515	ENSPREP00000011522	Caveolae associated protein 1a.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.404
LOC103469402	flot1	ENSPREP00000014515	ENSPREP00000019284	Caveolae associated protein 1a.	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	0.404
LOC103472976	LOC103466888	ENSPREP00000011522	ENSPREP00000004507	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family.	0.624
LOC103472976	LOC103469402	ENSPREP00000011522	ENSPREP00000014515	Flotillin; Belongs to the band 7/mec-2 family. Flotillin subfamily.	Caveolae associated protein 1a.	0.404

page 1 of 2

Server load: low (12%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About