pde6g protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pde6g

Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog a. (90 aa)

Predicted Functional Partners:

pde6a

0.968

LOC103473654

0.968

LOC108165778

0.902

LOC103481584

0.901

erp27

0.899

LOC103472243

0.883

gnat1

0.857

LOC103467179

0.857

LOC103481657

0.843

LOC103464516

0.808

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103464516	LOC103467179	ENSPREP00000006363	ENSPREP00000021938	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.987
LOC103464516	LOC103472243	ENSPREP00000006363	ENSPREP00000003752	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.993
LOC103464516	LOC103473654	ENSPREP00000006363	ENSPREP00000013738	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Phosphodiesterase.	0.750
LOC103464516	LOC103481584	ENSPREP00000006363	ENSPREP00000010893	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.709
LOC103464516	LOC103481657	ENSPREP00000006363	ENSPREP00000015094	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.874
LOC103464516	LOC108165778	ENSPREP00000006363	ENSPREP00000019206	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Uncharacterized protein.	0.784
LOC103464516	gnat1	ENSPREP00000006363	ENSPREP00000005925	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.987
LOC103464516	pde6a	ENSPREP00000006363	ENSPREP00000011568	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Phosphodiesterase.	0.777
LOC103464516	pde6g	ENSPREP00000006363	ENSPREP00000004512	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog a.	0.808
LOC103467179	LOC103464516	ENSPREP00000021938	ENSPREP00000006363	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.987
LOC103467179	LOC103472243	ENSPREP00000021938	ENSPREP00000003752	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.984
LOC103467179	LOC103473654	ENSPREP00000021938	ENSPREP00000013738	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Phosphodiesterase.	0.890
LOC103467179	LOC103481584	ENSPREP00000021938	ENSPREP00000010893	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog b.	0.696
LOC103467179	LOC103481657	ENSPREP00000021938	ENSPREP00000015094	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.888
LOC103467179	LOC108165778	ENSPREP00000021938	ENSPREP00000019206	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Uncharacterized protein.	0.849
LOC103467179	gnat1	ENSPREP00000021938	ENSPREP00000005925	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.920
LOC103467179	pde6a	ENSPREP00000021938	ENSPREP00000011568	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Phosphodiesterase.	0.909
LOC103467179	pde6g	ENSPREP00000021938	ENSPREP00000004512	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog a.	0.857
LOC103472243	LOC103464516	ENSPREP00000003752	ENSPREP00000006363	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), beta polypeptide 1b.	0.993
LOC103472243	LOC103467179	ENSPREP00000003752	ENSPREP00000021938	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.984