STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
clcn3Chloride channel protein. (879 aa)    
Predicted Functional Partners:
lats2
Large tumor suppressor kinase 2.
    
 0.617
farsb
Phenylalanyl-tRNA synthetase subunit beta; Belongs to the EF-1-beta/EF-1-delta family.
      
 0.617
lats1
Large tumor suppressor kinase 1.
    
 0.617
tmem9
Transmembrane protein 9.
    
 
 0.611
tmem9b
TMEM9 domain family, member B.
    
 
 0.611
LPCAT1
Lysophosphatidylcholine acyltransferase 1.
      
 0.557
ostm1
Osteoclastogenesis associated transmembrane protein 1.
    
 0.545
exosc10
Exosome component 10.
     
 0.532
fbf1
Uncharacterized protein.
      
 0.503
ENSPREP00000015831
Uncharacterized protein.
      
 0.484
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.