STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fndc5Fibronectin type-III domain-containing protein. (217 aa)    
Predicted Functional Partners:
bag6
BCL2 associated athanogene 6.
    
   0.736
get4
Guided entry of tail-anchored proteins factor 4.
    
   0.586
prdm16
Si:ch211-263k4.2.
      
 0.554
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
      
 0.503
ENSPREP00000031993
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.470
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
      
 0.462
ldlrap1
Low density lipoprotein receptor adaptor protein 1b.
      
 0.458
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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