STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
btaf1BTAF1 RNA polymerase II, B-TFIID transcription factor-associated. (1827 aa)    
Predicted Functional Partners:
drap1
DR1-associated protein 1 (negative cofactor 2 alpha).
    
 
 0.959
dr1
Down-regulator of transcription 1.
    
 
 0.937
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 
 0.928
phf12
PHD finger protein 12b.
   
 
 0.895
taf6
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 
 0.886
Taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 
 0.880
LOC103458155
CBFD_NFYB_HMF domain-containing protein.
    
 
 0.876
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 
 0.872
tbpl2
Uncharacterized protein.
    
 
 0.851
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
  
 
0.839
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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