STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptprgCarbonic anhydrase XVI b. (1383 aa)    
Predicted Functional Partners:
cntn2
Contactin 2.
    
 0.674
CNTN1
Contactin 1.
    
 0.614
cntn1
Contactin 1b.
    
 0.614
cntn5
Contactin 5.
    
 0.614
LOC103467234
Contactin 3a, tandem duplicate 2.
    
 0.614
LOC103467239
Contactin 3a, tandem duplicate 1.
    
 0.614
LOC103465393
Uncharacterized protein.
    
 0.614
LOC103465395
Contactin 4.
    
 0.614
LOC103460464
Contactin 3b.
    
 0.614
lum
Lumican.
   
 0.600
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.