ENSPREP00000004616 protein (Poecilia reticulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSPREP00000004616

Uncharacterized protein. (91 aa)

Predicted Functional Partners:

appl1

0.825

appl2

0.821

LOC103457075

0.727

MYO6

0.727

nrp1

0.639

tgfbr3

0.607

tgfb2

0.602

brca2

0.597

agmat

0.567

LOC103468535

0.554

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPREP00000004616	LOC103457075	ENSPREP00000004616	ENSPREP00000017437	Uncharacterized protein.	Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.727
ENSPREP00000004616	LOC103468535	ENSPREP00000004616	ENSPREP00000025763	Uncharacterized protein.	Phospholipase B-like; Putative phospholipase.	0.554
ENSPREP00000004616	MYO6	ENSPREP00000004616	ENSPREP00000031532	Uncharacterized protein.	Myosin VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.727
ENSPREP00000004616	agmat	ENSPREP00000004616	ENSPREP00000032893	Uncharacterized protein.	Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.	0.567
ENSPREP00000004616	appl1	ENSPREP00000004616	ENSPREP00000001415	Uncharacterized protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.825
ENSPREP00000004616	appl2	ENSPREP00000004616	ENSPREP00000027453	Uncharacterized protein.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.821
ENSPREP00000004616	brca2	ENSPREP00000004616	ENSPREP00000018297	Uncharacterized protein.	BRCA2 DNA repair associated.	0.597
ENSPREP00000004616	nrp1	ENSPREP00000004616	ENSPREP00000008824	Uncharacterized protein.	Neuropilin; Belongs to the neuropilin family.	0.639
ENSPREP00000004616	tgfb2	ENSPREP00000004616	ENSPREP00000022574	Uncharacterized protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.602
ENSPREP00000004616	tgfbr3	ENSPREP00000004616	ENSPREP00000021069	Uncharacterized protein.	Transforming growth factor, beta receptor III.	0.607
LOC103457075	ENSPREP00000004616	ENSPREP00000017437	ENSPREP00000004616	Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.727
LOC103457075	MYO6	ENSPREP00000017437	ENSPREP00000031532	Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.900
LOC103468535	ENSPREP00000004616	ENSPREP00000025763	ENSPREP00000004616	Phospholipase B-like; Putative phospholipase.	Uncharacterized protein.	0.554
LOC103468535	agmat	ENSPREP00000025763	ENSPREP00000032893	Phospholipase B-like; Putative phospholipase.	Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.	0.549
MYO6	ENSPREP00000004616	ENSPREP00000031532	ENSPREP00000004616	Myosin VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.727
MYO6	LOC103457075	ENSPREP00000031532	ENSPREP00000017437	Myosin VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.900
agmat	ENSPREP00000004616	ENSPREP00000032893	ENSPREP00000004616	Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.	Uncharacterized protein.	0.567
agmat	LOC103468535	ENSPREP00000032893	ENSPREP00000025763	Agmatine ureohydrolase (agmatinase); Belongs to the arginase family.	Phospholipase B-like; Putative phospholipase.	0.549
appl1	ENSPREP00000004616	ENSPREP00000001415	ENSPREP00000004616	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Uncharacterized protein.	0.825
appl1	appl2	ENSPREP00000001415	ENSPREP00000027453	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.966