STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
parlRhomboid domain-containing protein. (358 aa)    
Predicted Functional Partners:
pink1
PTEN induced kinase 1.
    
 
 0.788
stoml2
Stomatin (EPB72)-like 2.
   
 0.771
yme1l1
YME1-like 1a; Belongs to the AAA ATPase family.
   
 
 0.718
LOC103478959
YME1-like 1b.
   
 
 0.718
timm13
Translocase of inner mitochondrial membrane 13 homolog (yeast); Belongs to the small Tim family.
      
 0.659
LOC103481890
Cytochrome c oxidase assembly homolog 11 (yeast).
   
  
 0.614
opa1
OPA1 mitochondrial dynamin like GTPase; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 
 0.612
ENSPREP00000020277
RBR-type E3 ubiquitin transferase.
    
 
 0.611
timm8a
Translocase of inner mitochondrial membrane 8 homolog A (yeast); Belongs to the small Tim family.
      
 0.604
ndufb7
NADH:ubiquinone oxidoreductase subunit B7.
      
 0.602
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.