STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479643Period circadian clock 2. (1451 aa)    
Predicted Functional Partners:
timeless
Timeless circadian clock.
   
 0.845
fbxw11
F-box and WD repeat domain containing 11a.
    
 0.833
LOC103466760
Cryptochrome circadian regulator 2.
   
 0.827
LOC103462600
Cryptochrome circadian regulator 5.
   
 0.826
LOC103456565
Cryptochrome DASH.
   
 0.823
LOC103466198
Cryptochrome circadian regulator 1b.
   
 0.822
csnk1d
Casein kinase 1, delta b; Belongs to the protein kinase superfamily.
    
 0.794
LOC103481034
Casein kinase 1, epsilon; Belongs to the protein kinase superfamily.
    
 0.794
LOC103468446
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.794
LOC103459142
Cryptochrome circadian regulator 1a.
   
 0.777
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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