STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103479643Period circadian clock 2. (1451 aa)    
Predicted Functional Partners:
timeless
Timeless circadian clock.
   
 0.829
LOC103459142
Cryptochrome circadian regulator 1a.
   
 0.827
LOC103466760
Cryptochrome circadian regulator 2.
   
 0.824
LOC103456565
Cryptochrome DASH.
   
 0.765
csnk1d
Casein kinase 1, delta b; Belongs to the protein kinase superfamily.
    
 0.746
LOC103481034
Casein kinase 1, epsilon; Belongs to the protein kinase superfamily.
    
 0.746
LOC103468446
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.746
LOC103462600
Cryptochrome circadian regulator 5.
   
 0.743
LOC103466198
Cryptochrome circadian regulator 1b.
   
 0.742
fbxw11
F-box and WD repeat domain containing 11a.
    
 0.733
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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