sra1 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

sra1

Uncharacterized protein. (273 aa)

Predicted Functional Partners:

dcp1a

0.808

sec24c

0.789

sec24d

0.785

pus1

0.727

tmem245

0.727

dbp

0.696

LOC103467425

0.595

eprs1

0.583

pus10

0.579

LOC103464900

0.576

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103464900	sec24c	ENSPREP00000000656	ENSPREP00000006605	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	SEC24 homolog C, COPII coat complex component.	0.987
LOC103464900	sec24d	ENSPREP00000000656	ENSPREP00000027888	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	SEC24 homolog D, COPII coat complex component.	0.985
LOC103464900	sra1	ENSPREP00000000656	ENSPREP00000004674	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Uncharacterized protein.	0.576
LOC103467425	sra1	ENSPREP00000029182	ENSPREP00000004674	Zgc:194242.	Uncharacterized protein.	0.595
dbp	sra1	ENSPREP00000012052	ENSPREP00000004674	D site albumin promoter binding protein b.	Uncharacterized protein.	0.696
dcp1a	sra1	ENSPREP00000000963	ENSPREP00000004674	Decapping mRNA 1A.	Uncharacterized protein.	0.808
eprs1	sra1	ENSPREP00000006338	ENSPREP00000004674	Glutamyl-prolyl-tRNA synthetase.	Uncharacterized protein.	0.583
pus1	pus10	ENSPREP00000010647	ENSPREP00000030902	Pseudouridine synthase 1.	Pseudouridine synthase 10.	0.763
pus1	sra1	ENSPREP00000010647	ENSPREP00000004674	Pseudouridine synthase 1.	Uncharacterized protein.	0.727
pus10	pus1	ENSPREP00000030902	ENSPREP00000010647	Pseudouridine synthase 10.	Pseudouridine synthase 1.	0.763
pus10	sra1	ENSPREP00000030902	ENSPREP00000004674	Pseudouridine synthase 10.	Uncharacterized protein.	0.579
sec24c	LOC103464900	ENSPREP00000006605	ENSPREP00000000656	SEC24 homolog C, COPII coat complex component.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.987
sec24c	sec24d	ENSPREP00000006605	ENSPREP00000027888	SEC24 homolog C, COPII coat complex component.	SEC24 homolog D, COPII coat complex component.	0.994
sec24c	sra1	ENSPREP00000006605	ENSPREP00000004674	SEC24 homolog C, COPII coat complex component.	Uncharacterized protein.	0.789
sec24d	LOC103464900	ENSPREP00000027888	ENSPREP00000000656	SEC24 homolog D, COPII coat complex component.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.985
sec24d	sec24c	ENSPREP00000027888	ENSPREP00000006605	SEC24 homolog D, COPII coat complex component.	SEC24 homolog C, COPII coat complex component.	0.994
sec24d	sra1	ENSPREP00000027888	ENSPREP00000004674	SEC24 homolog D, COPII coat complex component.	Uncharacterized protein.	0.785
sra1	LOC103464900	ENSPREP00000004674	ENSPREP00000000656	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.576
sra1	LOC103467425	ENSPREP00000004674	ENSPREP00000029182	Uncharacterized protein.	Zgc:194242.	0.595
sra1	dbp	ENSPREP00000004674	ENSPREP00000012052	Uncharacterized protein.	D site albumin promoter binding protein b.	0.696