STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mdga1MAM domain containing glycosylphosphatidylinositol anchor 1. (952 aa)    
Predicted Functional Partners:
rnpc3
RNA-binding region (RNP1, RRM) containing 3.
      
 0.758
wdr43
WD repeat domain 43.
      
 0.570
LOC103457203
Zinc finger, AN1-type domain 3.
      
 0.548
LOC103480578
Neuroligin 2a.
   
 0.527
ext1
Exostosin glycosyltransferase 1b; Belongs to the glycosyltransferase 47 family.
     
 0.519
LOC103478346
Uncharacterized protein; Belongs to the glycosyltransferase 47 family.
     
 0.519
LOC103457265
Uncharacterized protein; Belongs to the glycosyltransferase 47 family.
     
 0.519
lrfn5
Leucine rich repeat and fibronectin type III domain containing 5a.
   
 0.510
arl16
ADP-ribosylation factor-like 16.
     
 0.508
actr10
Actin related protein 10; Belongs to the actin family.
    
 0.505
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.