STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPREP00000004733Uncharacterized protein. (288 aa)    
Predicted Functional Partners:
actn1
Actinin, alpha 1.
   
 0.944
ACTN4
Actinin alpha 4.
   
 0.944
LOC103462148
Uncharacterized protein.
    
 0.914
actb
Uncharacterized protein.
    
 0.914
zyx
Zyxin.
  
  
 
0.902
ccar1
Cell division cycle and apoptosis regulator 1.
    
   0.893
LOC103472711
Uncharacterized protein.
    
   0.813
rtn4ip1
Reticulon 4 interacting protein 1.
    
   0.764
LOC103457454
PKS_ER domain-containing protein.
    
   0.764
ENSPREP00000005826
Vasodilator stimulated phosphoprotein b.
   
 0.683
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.