STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466303Sulfotransferase; Belongs to the sulfotransferase 1 family. (396 aa)    
Predicted Functional Partners:
LOC103459205
Keratocan.
     
 0.702
lum
Lumican.
     
 0.636
LOC103466363
Sulfotransferase; Belongs to the sulfotransferase 1 family.
   
   0.633
ntan1
Uncharacterized protein.
      
 0.536
fam210b
Family with sequence similarity 210 member B.
   
  
 0.494
chst12
Carbohydrate sulfotransferase.
   
  
 0.493
ubiad1
UbiA prenyltransferase domain containing 1.
      
 0.485
ogn
Osteoglycin, paralog a.
     
 0.437
ENSPREP00000023466
Uncharacterized protein.
     
 0.437
aspn
Asporin.
     
 0.415
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.