STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
epm2aEPM2A glucan phosphatase, laforin. (196 aa)    
Predicted Functional Partners:
NHLRC1
NHL repeat containing E3 ubiquitin protein ligase 1.
    
 0.997
stbd1
CBM20 domain-containing protein.
    
 
 0.967
LOC103470518
NFU1 iron-sulfur cluster scaffold homolog (S. cerevisiae).
   
 
 0.655
agl
Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase b.
   
 
 0.645
ENSPREP00000000839
Protein kinase, AMP-activated, beta 1 non-catalytic subunit, a.
   
 
 0.628
PRKAB2
Protein kinase AMP-activated non-catalytic subunit beta 2.
   
 
 0.628
LOC103469702
Protein kinase, AMP-activated, beta 1 non-catalytic subunit, b.
   
 
 0.628
ENSPREP00000001430
Protein phosphatase 1, regulatory subunit 3Db.
   
 0.626
Ppp1r3b
Protein phosphatase 1 regulatory subunit.
   
 0.626
ENSPREP00000010103
Protein phosphatase 1 regulatory subunit.
   
 0.626
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.