STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc45Leucine rich repeat containing 45. (674 aa)    
Predicted Functional Partners:
crocc
Uncharacterized protein.
   
  
 0.645
cntln
Centlein, centrosomal protein.
      
 0.621
ENSPREP00000026574
ANK_REP_REGION domain-containing protein.
   
    0.593
sclt1
Sodium channel and clathrin linker 1.
    
 
 0.561
cep89
Centrosomal protein 89.
     
 0.557
cep135
Centrosomal protein 135.
      
 0.549
armc8
Armadillo repeat containing 8.
      
 0.549
ENSPREP00000024682
KxDL motif containing 1.
    
  0.491
fbf1
Uncharacterized protein.
   
 
 0.485
LOC103482259
WD repeat domain 37.
      
 0.469
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.