STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103480823Uncharacterized protein. (997 aa)    
Predicted Functional Partners:
Sh3yl1
SH3 and SYLF domain containing 1.
    
   0.897
ficd
FIC domain containing.
      
 0.602
stam
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.
     
 0.591
vps28
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
    
  0.578
LOC103475657
ENTH domain-containing protein.
     
 0.575
clint1
Clathrin interactor 1a.
     
 0.575
vta1
Vesicle (multivesicular body) trafficking 1.
    
   0.560
LOC103468028
Charged multivesicular body protein 4Bb.
    
  0.545
chmp4c
Charged multivesicular body protein 4C.
    
  0.545
LOC103464227
Uncharacterized protein.
    
  0.545
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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